Human Gut Mycobiome Atlas

The Human Gut Mycobiome Atlas—the largest of its kind to date—comprising 46,400 samples and 3.1 billion microfungal DNA sequences from 83 studies across the globe.

Paper MycoGAP HuGMycoA Data

Overview

This dataset includes over 46,400 samples of publicly available ITS amplicon sequencing data, all processed using the same pipeline (MycoGAP) and reference database.

Samples 46,400 samples 83 sub-projects
Regions 66 regions 26 countries 4 continents
Taxa 57,197 species hypotheses 2,293 genera 20 phyla
Human Gut Mycobiome Atlas

Search Fungal Abundance & Prevalence

Filter by taxon level, region level/region, search taxon name and export data.

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Resources

Research Paper

Read the full study describing the construction, analysis, and biological insights from the Human Gut Mycobiome Atlas.

View Paper

MycoGAP Pipeline

A standardized bioinformatics pipeline for profiling fungal communities from ITS amplicon sequencing data.

Go to GitHub

R Package - HuGMycoA

Tools for accessing, analyzing, and visualizing data from the Human Gut Mycobiome Atlas.

Install Package

Data

All processed fungal sequences and metadata are available for bulk download.

Download Data

Contact Us

Have questions or suggestions? Reach out to the research team for collaboration or support.

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