Human Gut Mycobiome Atlas

Paper MycoGAP HuGMycoA Data

Overview

This dataset includes over 46,400 samples of publicly available ITS amplicon sequencing data, all processed using the same pipeline (MycoGAP) and reference database.

Samples 46,400 samples 83 subprojects 66 regions 26 countries 4 continents

Taxa 57,197 species hypotheses 2,293 genera 681 families 255 orders 94 classes 20 phyla

Sample Summary Tables

By Continent By Country By Region By Subproject

Top 10 by Sample Number

Search Fungal Abundance & Prevalence

Filter by taxon level, region level/region, search taxon name and export data.

Phylum Class Order Family Genus Species Globe Continent Country All Search Export data

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Disease Associated Taxa

Sample composition and taxon enrichment at case-control cohorts.

Sample Number Taxa Enrichment

Genus Level Species Hypotheses Level All Diseases All Status Case enriched Control enriched Search Export data

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Resources

Fungi Atlas Code

Code release for the Human Gut Mycobiome Atlas Project

Go to GitHub

MycoGAP Pipeline

A standardized bioinformatics pipeline for profiling fungal communities from ITS amplicon sequencing data.

Go to GitHub

Data Download

All processed fungal sequences and metadata are available for bulk download.

Download Data

R Package - HuGMycoA

Tools for accessing, analyzing, and visualizing data from the Human Gut Mycobiome Atlas.

Install Package

Contact Us

E-mail: zhengjusheng@westlake.edu.cn